PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G23830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 336aa    MW: 36126.8 Da    PI: 4.9203
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G23830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.5e-16253289135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg     Tp++Rrgpdg++tLCnaCGl+++ kg+
  OPUNC06G23830.1 253 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 289
                      ****977777***********************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.975117152IPR010399Tify domain
SMARTSM009795.9E-11117152IPR010399Tify domain
PfamPF062003.8E-13120151IPR010399Tify domain
PROSITE profilePS5101713.404178220IPR010402CCT domain
PfamPF062037.7E-16178220IPR010402CCT domain
SMARTSM004011.5E-11247300IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.091247295IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-12251310No hitNo description
CDDcd002024.75E-14252302No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15252294IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440253280IPR000679Zinc finger, GATA-type
PfamPF003208.0E-14253288IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERPP PPAPAEDAAA HAAPTVDHLA AVAAEAEAMA RYEEEHGVLA  60
HGQEAEDEEE DDLEEEEVME EDEEDGDAHH HEGDAEEAVP MDAQLDPHGG MVAAAVQPMA  120
SNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGLG SGASSSAPYS KRLNFPHRVA  180
SLMRFREKRK ERNFDKKIRY SVRKEVALRM QRNRGQFTSS KPKGDEATSE LTASDGSPNW  240
GSVEGRPPSA AECHHCGINA KATPMMRRGP DGPRTLCNAC GLMWANKGML RDLSKAPPTP  300
IQVVASVNDG NGSAAAHTTE QEIPAPATAN GHESST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2433340.0AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641381.10.0PREDICTED: GATA transcription factor 20
SwissprotQ5Z4U50.0GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0E0LF620.0A0A0E0LF62_ORYPU; Uncharacterized protein
STRINGLOC_Os06g48534.11e-174(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-74ZIM-LIKE 2